miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Antirrhinum majus, Coffea canephora, Fraxinus excelsior, Ipomoea batatas, Mimulus guttatus, Mimulus guttatus var. nasutus, Mimulus lewisii, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Ocimum basilicum, Petunia axillaris subsp. axillaris, Salvia miltiorrhiza, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Striga hermonthica, Triphysaria pusilla, Triphysaria versicolor, Capsicum annuum, Catharanthus roseus, Solanum tuberosum, Ipomoea nil



ABOUT THIS RECORD

ID: MNEST001273
species: Ipomoea batatas
miRNA family: MIR414
source: miRNEST

Taxonomy by NCBI:
Ipomoea batatas Ipomoea Ipomoeeae Convolvulaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ACATCATCATCTTCATCTTCA

miRNA*
AAGAATGAGAAGATGCGTTC

mismatches: 4
bulges: 1

View larger
pre-miRNA
TCGCCCACCTTATCATTCTCAACATCATCATCTTCATCTTCATCATCACTAGCAGCCTGTCTGCTATAAGTAACAGCGGAATTCCCAGGATTTGTCCGCT
TTAATTCATTAATCGATTCGAAACTACCTTCCGTACATTCCTCGTGCATAATCATCATCTTTTCGGCTACCTCCTCGATGCTTCCATCTCCGACCTCGGT
ATTGAAATCCGAAAGCATGAATTCGTCAAGAATTTCCTCTAAATCATCAATATATACCTGTTCCTTAGATTGAGTGAAGAATGAGAAGATGCGTTCAGAA
AGCTCTTGGGATTT


dot-bracket secondary structure
...((((........((((.(((..((((.((((..(((((((..(((.((((((.....))))))(((.(((.((((((..((....))....))))))
))).....)))...((((.(((......))).((((.......))))..)))).((((.(((((((........((((((((...............)))
)))))...))))))).))))((((.....))))....(((((......................))))).))))))))))..)))).)))).))).))))
......))))....



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt sp|Q3KRG3|TSR2_DANRE: 0.0001

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record





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