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Species belonging to selected taxon:
Sus scrofa
,
Bos taurus
,
Canis lupus familiaris
,
Ovis aries
,
Ursus americanus
,
Equus caballus
,
Bos indicus
,
Bos sp.
,
Capra hircus
ABOUT THIS RECORD
ID:
MNEST034157
species:
Sus scrofa
source:
miRBase, original name:
ssc-mir-4333
(
MI0015918
)
Taxonomy by NCBI:
Sus scrofa
Sus
Suidae
Suina
Cetartiodactyla
Laurasiatheria
Eutheria
Theria
Mammalia
Amniota
Tetrapoda
Sarcopterygii
Euteleostomi
Teleostomi
Gnathostomata
Vertebrata
Craniata
Chordata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
ATACCTGCATGTTAGTCTTTGGTTCT
miRNA*
GACTCGACTGGTGTGCGGACACTT
mismatches:
7
bulges:
2
View larger
pre-miRNA
TGAGATAAAT
ATACCTGCATGTTAGTCTTTGGTTCT
GGTAGAAATGACATGCAATTGTGCTGCCATATTTTACTATCAG
GACTCGACTGGTGTGCGGACA
CTT
TGGTTAGTAA
dot-bracket secondary structure
..........
....(((((..((((((...((((((
((((((((((.((.(((....))))).)))...)).)))))))
)))).))))))..)))))..(
((.
.....)))..
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
SNORA53: 4e-41
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
Solexa
references
[
1
] Sharbati S, Friedlander MR, Sharbati J, Hoeke L, Chen W, Keller A, Stahler PF, Rajewsky N, Einspanier R,
BMC Genomics. 11:275(2010).
,
"Deciphering the porcine intestinal microRNA transcriptome"