ABOUT THIS RECORDspecies: Sus scrofa
source: miRBase, original name: ssc-mir-4333 (MI0015918)
Taxonomy by NCBI:
Sus scrofa Sus Suidae Suina Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATACCTGCATGTTAGTCTTTGGTTCT miRNA* GACTCGACTGGTGTGCGGACACTT mismatches: 7 bulges: 2 |
pre-miRNA
TGAGATAAATATACCTGCATGTTAGTCTTTGGTTCTGGTAGAAATGACATGCAATTGTGCTGCCATATTTTACTATCAGGACTCGACTGGTGTGCGGACA
CTTTGGTTAGTAA
dot-bracket secondary structure
..............(((((..((((((...((((((((((((((((.((.(((....))))).)))...)).))))))))))).))))))..)))))..(
((......)))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Sharbati S, Friedlander MR, Sharbati J, Hoeke L, Chen W, Keller A, Stahler PF, Rajewsky N, Einspanier R, BMC Genomics. 11:275(2010)., "Deciphering the porcine intestinal microRNA transcriptome"
TGAGATAAATATACCTGCATGTTAGTCTTTGGTTCTGGTAGAAATGACATGCAATTGTGCTGCCATATTTTACTATCAGGACTCGACTGGTGTGCGGACA
CTTTGGTTAGTAA
dot-bracket secondary structure
..............(((((..((((((...((((((((((((((((.((.(((....))))).)))...)).))))))))))).))))))..)))))..(
((......)))..
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM SNORA53: 4e-41 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Sharbati S, Friedlander MR, Sharbati J, Hoeke L, Chen W, Keller A, Stahler PF, Rajewsky N, Einspanier R, BMC Genomics. 11:275(2010)., "Deciphering the porcine intestinal microRNA transcriptome"
