miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Allium cepa, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Dioscorea alata, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST045832
species: Curcuma longa
source: microPC, original name: miR167

Taxonomy by NCBI:
Curcuma longa Curcuma Zingiberaceae Zingiberales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 AAGCTGCCAGCATGATCT

miRNA*
 ATCATTATGGCAGTTT

mismatches: 2
bulges: 0
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pre-miRNA
 AAGCTGCCAGCATGATCTCATGATATCCTTCTTTTCTTTTTCTTCTCAATCTCTCCTTTTGAATTTGTTTTCCGAAAAAAATAGATTAAAAATTCTGTAT
ATGTAACTAGGTCTAAATGTGAAGGAATCGACGAGATCATTATGGCAGTTT

dot-bracket secondary structure
(((((((((..((((((((.((((.((((((.....((((((....(((..((.......))..)))......)))))).(((((........)))))..
....................))))))))))..))))))))..)))))))))


SIMILARITIES
miRBase osa-MIR167h: 0.0005

PMRD vvi-miR167c: 0.0005

microPC miR167: 7e-34		UniProt no hits

RFAM no hits

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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