ABOUT THIS RECORDspecies: Curcuma longa
source: microPC, original name: miR167
Taxonomy by NCBI:
Curcuma longa Curcuma Zingiberaceae Zingiberales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAGCTGCCAGCATGATCT miRNA* ATCATTATGGCAGTTT mismatches: 2 bulges: 0 |
pre-miRNA
AAGCTGCCAGCATGATCTCATGATATCCTTCTTTTCTTTTTCTTCTCAATCTCTCCTTTTGAATTTGTTTTCCGAAAAAAATAGATTAAAAATTCTGTAT
ATGTAACTAGGTCTAAATGTGAAGGAATCGACGAGATCATTATGGCAGTTT
dot-bracket secondary structure
(((((((((..((((((((.((((.((((((.....((((((....(((..((.......))..)))......)))))).(((((........)))))..
....................))))))))))..))))))))..)))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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AAGCTGCCAGCATGATCTCATGATATCCTTCTTTTCTTTTTCTTCTCAATCTCTCCTTTTGAATTTGTTTTCCGAAAAAAATAGATTAAAAATTCTGTAT
ATGTAACTAGGTCTAAATGTGAAGGAATCGACGAGATCATTATGGCAGTTT
dot-bracket secondary structure
(((((((((..((((((((.((((.((((((.....((((((....(((..((.......))..)))......)))))).(((((........)))))..
....................))))))))))..))))))))..)))))))))
SIMILARITIES| miRBase osa-MIR167h: 0.0005 PMRD vvi-miR167c: 0.0005 microPC miR167: 7e-34 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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