miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Allium cepa, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Dioscorea alata, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST000530
species: Cynodon dactylon
miRNA family: MIR812
source: miRNEST

Taxonomy by NCBI:
Cynodon dactylon Cynodon Eleusininae Cynodonteae Chloridoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTGAATAAGACGAATGATCAA

miRNA*
GATCCTTCGTCTTATTTAAAA

mismatches: 1
bulges: 0

View larger
pre-miRNA
TAGTATGTGTTACTCCCTCCGTCCGAAAATATAAGCATTTATTGATTTTTAGATATCATTTTTGATCCTTCGTCTTATTTAAAAAATTTGTAAAATATAA
AATTAAATAAGTCATATTTAAAGTATATCTAATGATAAAGTTGACTATAATAAAATTAATAATAATTTTATAACTATTTTGAATAAGACGAATGATCAAA
CATAAAATTCAAAAGTCAACAAATACTTATATTTCTGGACAAAGGGAGTACTCTGCTCG


dot-bracket secondary structure
.((((...((.(((((((..(((((.(((((((((.((((.(((((((((.(((...((.(((((((.((((((((((((((((...(((((((((....
.(((((...(((((..((((...(((.....))).))))..))))).........)))))....)))))))))...)))))))))))))))).)))))))
.))...))).))))))))).)))).))))))))).)))))..)))))))))..))))..



SIMILARITIES
miRBase osa-MIR1884a: 0.0000009

PMRD osa-miRf10603-akr: 0.0000002

microPC miR1128: 0.00005
UniProt no hits

RFAM MIR812: 0.00000000000007
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record





Liczniki na strone;