miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Allium cepa, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Dioscorea alata, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor

ABOUT THIS RECORD

ID: MNEST005800
species: Triticum aestivum
miRNA family: MIR1120
source: miRNEST

Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
TAGTACAAAGATGAGTCATCT

miRNA*
ATGACTCAACTTTATACTAAC

mismatches: 3
bulges: 0

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pre-miRNA
AGCTTAAATGTACTCCCTCCGTTCCAAGATAAATGACTCAACTTTATACTAACTTTAACATAAACTTAGTACAAAGATGAGTCATCTATTTAAAACGGAG
GAAGTATGAGGGAGTA

dot-bracket secondary structure
.((((...((((((.((((((((...(((((.((((((((.((((.((((((.((((...)))).)))))).)))).)))))))).)))))..)))))))
).))))))...)))).

UniProt no hits

RFAM MIR1122: 3e-23

most similar mature miRNAs

Identical with: miR1137 from microPC (MNEST046385)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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