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Species belonging to selected taxon:

Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Theobroma cacao



ABOUT THIS RECORD

ID: MNEST002736
species: Theobroma cacao
miRNA family: MIRf536
source: miRNEST

Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CATTGGACTGAAGGGAGCTCC

miRNA*
AGCTCCTTTCAGTCCAATACA

mismatches: 1
bulges: 0

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pre-miRNA
GGGGGGCTAAGGAGCTCCTTTCAGTCCAATACAGGGGGCAGAGATGTGGATAGAGCTGCCATCTCATGCATTGGGTTATGCTTAGTGTTTTATTGGAAAG
ATTTGCCAATATTCATCACCCAAAAAAGAGGGAGAAGATTATGAATGTTGAGTTTAGCCCGATGCATGGTGTGGGAGCAACTCCTTCCACATACTTTGCC
CACCCATTGGACTGAAGGGAGCTCCTGGTTTCAT


dot-bracket secondary structure
..(((((((.((((((((((((((((((((...(((((((((((((((((..(((((.((((.(((((((((((((((.(((((((((((((((((....
.....)))))).((.((.(((........))).)).))....))))))))))).))))))))))))))).)))).)))...))..))))))).)))))))
).)).)))))))))))))))))))))))))))..



SIMILARITIES
miRBase ptc-MIR319e: 2e-23

PMRD ptc-miRf10576-akr: 2e-23

microPC miR319: 0.0007
UniProt no hits

RFAM MIR159: 3e-25
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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