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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Eucalyptus globulus, Eucalyptus gunnii, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Limnanthes alba, Paullinia cupana var. sorbilis, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Tropaeolum majus, Carica papaya, Citrus clementina, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST002736
species: Theobroma cacao
miRNA family: MIRf536
source: miRNEST

Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CATTGGACTGAAGGGAGCTCC

miRNA*
 AGCTCCTTTCAGTCCAATACA

mismatches: 1
bulges: 0
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pre-miRNA
 GGGGGGCTAAGGAGCTCCTTTCAGTCCAATACAGGGGGCAGAGATGTGGATAGAGCTGCCATCTCATGCATTGGGTTATGCTTAGTGTTTTATTGGAAAG
ATTTGCCAATATTCATCACCCAAAAAAGAGGGAGAAGATTATGAATGTTGAGTTTAGCCCGATGCATGGTGTGGGAGCAACTCCTTCCACATACTTTGCC
CACCCATTGGACTGAAGGGAGCTCCTGGTTTCAT

dot-bracket secondary structure
..(((((((.((((((((((((((((((((...(((((((((((((((((..(((((.((((.(((((((((((((((.(((((((((((((((((....
.....)))))).((.((.(((........))).)).))....))))))))))).))))))))))))))).)))).)))...))..))))))).)))))))
).)).)))))))))))))))))))))))))))..


SIMILARITIES
miRBase ptc-MIR319e: 2e-23

PMRD ptc-miRf10576-akr: 2e-23

microPC miR319: 0.0007		UniProt no hits

RFAM MIR159: 3e-25		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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