miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Aplysia californica, Lottia gigantea, Crassostrea gigas, Biomphalaria glabrata, Mytilus californianus, Euprymna scolopes, Lymnaea stagnalis



ABOUT THIS RECORD

ID: MNEST038861
species: Lottia gigantea
miRNA family: mir-9
source: miRBase, original name: lgi-mir-79 (MI0010114)

Taxonomy by NCBI:
Lottia gigantea Lottia Lottiidae Acmaeioidea Nacellina Docoglossa Eogastropoda Gastropoda Mollusca Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ATAAAGCTAGGTTACCAAAGGC

miRNA*
CTTTGGTTATCTAGCTGTATGA

mismatches: 2
bulges: 0

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pre-miRNA
GAAGTGAAAGCTCTGTTTTTGTCTTTGGTTATCTAGCTGTATGATTGAAATAGAAACATTATAAAGCTAGGTTACCAAAGGCAAAAATGGTGACTATACT
C


dot-bracket secondary structure
..((((....(.(((((((((((((((((.((((((((.((((((............)))))).)))))))).))))))))))))))))).)....))))
.



SIMILARITIES
miRBase lgi-mir-9: 5e-52

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-9: 0.0000000004

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"




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