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Species belonging to selected taxon:
Oryzias latipes
,
Gasterosteus aculeatus
,
Gadus morhua
,
Oreochromis niloticus
,
Fundulus heteroclitus
,
Sparus aurata
,
Dicentrarchus labrax
,
Dissostichus mawsoni
,
Anoplopoma fimbria
,
Esox lucius
,
Takifugu rubripes
,
Sebastes caurinus
,
Perca flavescens
,
Paralabidochromis chilotes
,
Hippoglossus hippoglossus
,
Poecilia reticulata
,
Paralichthys olivaceus
,
Psetta maxima
,
Lates calcarifer
,
Sebastes rastrelliger
,
Solea senegalensis
,
Thunnus thynnus
,
Cynoglossus semilaevis
ABOUT THIS RECORD
ID:
MNEST009553
species:
Perca flavescens
miRNA family:
miR-3214
source:
miRNEST
Taxonomy by NCBI:
Perca flavescens
Perca
Percinae
Percidae
Percoidei
Perciformes
Percomorpha
Euacanthopterygii
Acanthopterygii
Holacanthopterygii
Euacanthomorpha
Acanthomorpha
Ctenosquamata
Eurypterygii
Neoteleostei
Neognathi
Euteleostei
Clupeocephala
Elopocephala
Teleostei
Neopterygii
Actinopteri
Actinopterygii
Euteleostomi
Teleostomi
Gnathostomata
Vertebrata
Craniata
Chordata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AAGATAGATAGAAAGATAGAA
miRNA*
CTATTGACCTTTCATCTCTA
mismatches:
5
bulges:
1
View larger
pre-miRNA
TAGATCCGTGTT
CTATTGACCTTTCATCTCTA
TTGATCTCTCGCCTCTGCCTGGTTCATGTGTGTTTGACATGTTTCTGCTACTATAATTGACTGTATAA
ATATACATAAAAAAAAATATATATATATATAAATTGAGATTGATATTACC
AAGATAGATAGAAAGATAGAA
CAAGAGAAA
dot-bracket secondary structure
....((..((((
(((((...((.((((((.((
(((((((((((.....((..((..(((((.......)))))..)).)).........))).((((((.
(((((.((........)).))))).))))))....)))))))))).....
.)))).)).))...)))))))
)).))....
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record