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Species belonging to selected taxon:
Panicum virgatum
,
Saccharum hybrid cultivar CoS 767
,
Saccharum hybrid cultivar SP70-1143
,
Saccharum officinarum
,
Sorghum propinquum
,
Cenchrus ciliaris
,
Zea mays
,
Sorghum bicolor
ABOUT THIS RECORD
ID:
MNEST003614
species:
Zea mays
miRNA family:
miR169o
source:
miRNEST
Taxonomy by NCBI:
Zea mays
Zea
Andropogoneae
Panicoideae
PACCAD clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GGCAGGTCTTCTTGGCTAGCC
miRNA*
TAGCCAAGAATGACTTGCCTA
mismatches:
0
bulges:
2
View larger
pre-miRNA
ACACNTTACGCCACAGAACTTGCAGGCATGGCTGAAGGTTAAGAAGAAAAAGAGGAGGGCGGCCTCACATGGAGATGGAGAGCCCCTTTTGG
TAGCCAAG
AATGACTTGCCTA
TGCACGCCCTCTGTTGGCAGTTCCGTCCGGCAGCCATGGCGACGGTTGCACAAGGTGAGTTTTTGCGGCGTGGAGGATGCAATGCGG
CTGCATC
GGCAGGTCTTCTTGGCTAGCC
AGAGGGCTCTCGTCCACCATGCCAGGCCTCCCTCTTCAAAATTTCCCTGATTTTTGCCCTCTGCACATGGAA
CTTGGTGATTAAACTTT
dot-bracket secondary structure
........(((((.((..((((((((...(((.((((((((.((((.....((((((((.(((((..(((((.((((.(((((((..(((((
((((((((
((.((((((((.(
((((.(((...(((((.((..(((.((((...(((.(((.(((...(((.....))).))).))).))).)))))))))))))).))
)))))).
)))))))))))))))))).))
))))))))))))))..)))))..))))).))))))))....))))..))))))))))).))))))...))..
)))))))..........
SIMILARITIES
miRBase
zma-MIR169o
:
2e-69
PMRD
sbi-miR169i
:
4e-34
microPC
no hits
UniProt
no hits
RFAM
MIR169_5: 4e-93
most similar mature miRNAs
MORE
miRNEST target predictions: none
non-miRNEST targets: none
Source sequences
download this record