miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST003614
species: Zea mays
miRNA family: miR169o
source: miRNEST

Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GGCAGGTCTTCTTGGCTAGCC

miRNA*
 TAGCCAAGAATGACTTGCCTA

mismatches: 0
bulges: 2
View larger
pre-miRNA
 ACACNTTACGCCACAGAACTTGCAGGCATGGCTGAAGGTTAAGAAGAAAAAGAGGAGGGCGGCCTCACATGGAGATGGAGAGCCCCTTTTGGTAGCCAAG
AATGACTTGCCTATGCACGCCCTCTGTTGGCAGTTCCGTCCGGCAGCCATGGCGACGGTTGCACAAGGTGAGTTTTTGCGGCGTGGAGGATGCAATGCGG
CTGCATCGGCAGGTCTTCTTGGCTAGCCAGAGGGCTCTCGTCCACCATGCCAGGCCTCCCTCTTCAAAATTTCCCTGATTTTTGCCCTCTGCACATGGAA
CTTGGTGATTAAACTTT

dot-bracket secondary structure
........(((((.((..((((((((...(((.((((((((.((((.....((((((((.(((((..(((((.((((.(((((((..(((((((((((((
((.((((((((.(((((.(((...(((((.((..(((.((((...(((.(((.(((...(((.....))).))).))).))).)))))))))))))).))
)))))).)))))))))))))))))).))))))))))))))))..)))))..))))).))))))))....))))..))))))))))).))))))...))..
)))))))..........


SIMILARITIES
miRBase zma-MIR169o: 2e-69

PMRD sbi-miR169i: 4e-34

microPC no hits		UniProt no hits

RFAM MIR169_5: 4e-93		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
Source sequences
download this record




Liczniki na strone;