miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Glycine soja, Glycyrrhiza uralensis, Lotus japonicus, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Trifolium pratense, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Phaseolus vulgaris



ABOUT THIS RECORD

ID: MNEST001540
species: Medicago sativa
miRNA family: MIRf341
source: miRNEST

Taxonomy by NCBI:
Medicago sativa Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ATACTACCTCCGTCCCTAATT

miRNA*
TTANGGACNGAGGTAGTATCA

mismatches: 3
bulges: 0

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pre-miRNA
ACGTTAAGAAGATACTACCTCCGTCCCTAATTATAAGACCCTTTTGAGAATTTTTTTTGTCCCTTTTTATAAGACCCCTTTGCTATTTCCAACTACATTA
ATTATTTCTTTACATACATGCCCCTTTTTATTATACATCTTTTTCTTCAATAAGCAATAAATAACATGTTGAAAACATAAACCAACCCTCTCTCTNNNGG
ATAAAATTGTAAAACCAATANTAATTACAAACATATTTAATACAAAATCCNCTATCTTAATTNCNNNTATTTTTNNAANGNTNCNATATTANGGACNGAG
GTAGTATCA
TGTATGAG


dot-bracket secondary structure
..........(((((((((((.((((.((((...((((.....((((((.....((((((....((.(((.(((....((((...(((.((((....(((
.(((((.(((.........................................))).))))).)))...)))).)))..)))).......))).(((...))
).....((((((............))))))..)))...)).)))))).......)))))).........))))..............)))).)))).)))
)))))))).
........



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
Source sequences
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