miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Cynodon dactylon, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST000653
species: Festuca arundinacea
miRNA family: MIR160
source: miRNEST

Taxonomy by NCBI:
Festuca arundinacea Festuca Loliinae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGCCTGGCTCCCTGTATGCCA

miRNA*
 GCGTGCAAGGTGCCAAGCATG

mismatches: 3
bulges: 0
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pre-miRNA
 GATCTAATCAAGGTTGTGCTGTGCCTGGCTCCCTGTATGCCACACATGTAGCCCAACCCAAGAATGTGGTTGCCTGCTGTGGGTGGCGTGCAAGGTGCCA
AGCATGCATATATGTATATGGTCT

dot-bracket secondary structure
((((..........(((((.((((.((((.((.((((((((((...((((((.(((((((....)).)))))...)))))).)))))))))).)).))))
.))))))))).........)))).


SIMILARITIES
miRBase bdi-MIR160c: 9e-39

PMRD sbi-miR160a: 3e-23

microPC miR160: 1e-41		UniProt no hits

RFAM mir-160: 6e-25		most similar mature miRNAs

Identical with: miR160 from microPC (MNEST045344)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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