miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Avena barbata, Avena sativa, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Pseudoroegneria spicata, Triticum monococcum, Triticum turgidum subsp. durum, Brachypodium distachyon, Triticum aestivum



ABOUT THIS RECORD

ID: MNEST000995
species: Hordeum vulgare
miRNA family: MIRf341
source: miRNEST

Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TACTCCCTCCGTCTCAAAATA

miRNA*
TTTTAGGACCGAGGGAATATA

mismatches: 3
bulges: 0

View larger
pre-miRNA
GGCTTCTGTTATACTCCCTCCGTCTCAAAATAACTGTCTCAACTTTGTATTAGCTCTAGTACAAAGTTGTACTAAGCTTAAGACACTTATTTTAGGACCG
AGGGAATATA
TAGCATAG


dot-bracket secondary structure
.(((.....((((.((((((.((((.(((((((.((((((((((((((((((....)))))))))))))...........))))).))))))).)))).)
))))).))))
.)))....



SIMILARITIES
miRBase no hits

PMRD bdi-miR2502: 0.0000004

microPC miR1439: 1e-31
UniProt no hits

RFAM MIR1122: 1e-53
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record





Liczniki na strone;