ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TACTCCCTCCGTCTCAAAATA miRNA* TTTTAGGACCGAGGGAATATA mismatches: 3 bulges: 0 |
pre-miRNA
GGCTTCTGTTATACTCCCTCCGTCTCAAAATAACTGTCTCAACTTTGTATTAGCTCTAGTACAAAGTTGTACTAAGCTTAAGACACTTATTTTAGGACCG
AGGGAATATATAGCATAG
dot-bracket secondary structure
.(((.....((((.((((((.((((.(((((((.((((((((((((((((((....)))))))))))))...........))))).))))))).)))).)
))))).)))).)))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GGCTTCTGTTATACTCCCTCCGTCTCAAAATAACTGTCTCAACTTTGTATTAGCTCTAGTACAAAGTTGTACTAAGCTTAAGACACTTATTTTAGGACCG
AGGGAATATATAGCATAG
dot-bracket secondary structure
.(((.....((((.((((((.((((.(((((((.((((((((((((((((((....)))))))))))))...........))))).))))))).)))).)
))))).)))).)))....
SIMILARITIES| miRBase no hits PMRD bdi-miR2502: 0.0000004 microPC miR1439: 1e-31 | UniProt no hits RFAM MIR1122: 1e-53 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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