miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Caenorhabditis elegans, Ancylostoma caninum, Ascaris suum, Heterorhabditis bacteriophora, Brachionus plicatilis, Pristionchus pacificus, Caenorhabditis japonica, Caenorhabditis brenneri, Strongyloides ratti, Brugia malayi, Trichinella spiralis, Meloidogyne hapla, Heterodera glycines, Meloidogyne incognita, Caenorhabditis remanei, Trichinella pseudospiralis, Onchocerca volvulus, Nippostrongylus brasiliensis, Meloidogyne chitwoodi, Globodera rostochiensis, Strongyloides stercoralis, Ancylostoma ceylanicum



ABOUT THIS RECORD

ID: MNEST038095
species: Brugia malayi
miRNA family: mir-2
source: miRBase, original name: bma-mir-2b-1 (MI0013322)

Taxonomy by NCBI:
Brugia malayi Brugia Onchocercidae Filarioidea Spirurida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ATCACAGACCCGATGCAGCGA

miRNA*
GTTGTATCGGCTGTGATAT

mismatches: 1
bulges: 2

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pre-miRNA
GAGCGGTAGTTGTATCGGCTGTGATATGTTGTATGATTGGTTGTTGCTCACATCACAGACCCGATGCAGCGACTGCACTTGTGCTACTCCCG

dot-bracket secondary structure
..(((((.(((((((((((((((((.((..(((...........))).)).)))))))..)))))))))).)))))................


SIMILARITIES
miRBase bma-mir-2b-2: 3e-41

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern

references

[1] Poole CB, Davis PJ, Jin J, McReynolds LA, Mol Biochem Parasitol. 169:87-94(2010)., "Cloning and bioinformatic identification of small RNAs in the filarial nematode, Brugia malayi"




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