miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Caenorhabditis elegans, Ancylostoma caninum, Ascaris suum, Heterorhabditis bacteriophora, Brachionus plicatilis, Pristionchus pacificus, Caenorhabditis japonica, Caenorhabditis brenneri, Strongyloides ratti, Brugia malayi, Trichinella spiralis, Meloidogyne hapla, Heterodera glycines, Meloidogyne incognita, Caenorhabditis remanei, Trichinella pseudospiralis, Onchocerca volvulus, Nippostrongylus brasiliensis, Meloidogyne chitwoodi, Globodera rostochiensis, Strongyloides stercoralis, Ancylostoma ceylanicum



ABOUT THIS RECORD

ID: MNEST006900
species: Caenorhabditis elegans
miRNA family: miR-1747
source: miRNEST

Taxonomy by NCBI:
Caenorhabditis elegans Caenorhabditis Peloderinae Rhabditidae Rhabditoidea Rhabditida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGAACTTGAATGGAGTTCCGC

miRNA*
GGAACTCCGCGTGGTCCATA

mismatches: 4
bulges: 1

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pre-miRNA
GGTGGAACTCCGCGTGGTCCATAGCCAAGATCGGCAGAGATGGTGAGCTTCNACTTCTCACCAACTGACATCTGGGCGACTCCTTGGTCCCATCCCTTGA
TGACCTCTCCCTTTCCAATCTTGAACTTGAATGGAGTTCCGC


dot-bracket secondary structure
.(((((((((((...(((.((.......((..((.((((.(((((((.........))))))).....((((.(((.((((....))))....)))..))
))..)))).))..))......)).)))....)))))))))))



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt sp|Q554J3|FKBP1_DICDI: 0.000000000003

RFAM no hits
most similar mature miRNAs

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miRNEST target predictions: none
non-miRNEST targets: none
Source sequences
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