ABOUT THIS RECORDspecies: Cavia porcellus
miRNA family: miR-2137
source: miRNEST
Taxonomy by NCBI:
Cavia porcellus Cavia Caviidae Hystricognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCCGGCGGGAGCCCCGGGGAC miRNA* CTCCGGTGAGCTCTCGCTGGCCC mismatches: 3 bulges: 2 |
pre-miRNA
AACGCGACCGATCCCGGAAAAGCCGGCGGGAGCCCCGGGGACAGTTCTCTTTTCTTTGTGAAGGGCAAGTCGCCCTGCAATGGATTCGCCCCCAGAGAGG
GGCCCGTGCCTTGGAAAGCGTCGCGGTTCCGGAGGCCTCCGGTGAGCTCTCGCTGGCCCTTGAAAATCCGGAGGACA
dot-bracket secondary structure
.......((....(((((...((((((((((((.((((((..(((((........((((..(((((.....))))))))).))))).(((((......))
)))....(((((((((.((...))..)))).)))))))))))...)))))))))))).........))))).))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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AACGCGACCGATCCCGGAAAAGCCGGCGGGAGCCCCGGGGACAGTTCTCTTTTCTTTGTGAAGGGCAAGTCGCCCTGCAATGGATTCGCCCCCAGAGAGG
GGCCCGTGCCTTGGAAAGCGTCGCGGTTCCGGAGGCCTCCGGTGAGCTCTCGCTGGCCCTTGAAAATCCGGAGGACA
dot-bracket secondary structure
.......((....(((((...((((((((((((.((((((..(((((........((((..(((((.....))))))))).))))).(((((......))
)))....(((((((((.((...))..)))).)))))))))))...)))))))))))).........))))).))...
SIMILARITIES| miRBase bta-mir-2889: 0.0001 PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
