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Species belonging to selected taxon:

Salmo salar



ABOUT THIS RECORD

ID: MNEST006873
species: Salmo salar
miRNA family: mir-202
source: miRNEST

Taxonomy by NCBI:
Salmo salar Salmo Salmoninae Salmonidae Salmonoidei Salmoniformes Protacanthopterygii Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AGAGGCATAGGGCATGGGAAAA

miRNA*
TTCCTATGCATATACCTCTTT

mismatches: 2
bulges: 1

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pre-miRNA
CTGTTCCTTTTTCCTATGCATATACCTCTTTGAGATCTAGCTTTAAAGAGGCATAGGGCATGGGAAAATGGGGCT

dot-bracket secondary structure
..(((((.(((((((((((.(((.((((((((((.......)))))))))).)))..))))))))))).))))).


SIMILARITIES
miRBase dre-mir-202: 4e-27

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-202: 5e-24
most similar mature miRNAs

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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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