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Species belonging to selected taxon:
Salmo salar
,
Oncorhynchus mykiss
,
Oncorhynchus tshawytscha
,
Oncorhynchus nerka
,
Salvelinus fontinalis
ABOUT THIS RECORD
ID:
MNEST006873
species:
Salmo salar
miRNA family:
mir-202
source:
miRNEST
Taxonomy by NCBI:
Salmo salar
Salmo
Salmoninae
Salmonidae
Salmonoidei
Salmoniformes
Protacanthopterygii
Euteleostei
Clupeocephala
Elopocephala
Teleostei
Neopterygii
Actinopteri
Actinopterygii
Euteleostomi
Teleostomi
Gnathostomata
Vertebrata
Craniata
Chordata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AGAGGCATAGGGCATGGGAAAA
miRNA*
TTCCTATGCATATACCTCTTT
mismatches:
2
bulges:
1
View larger
pre-miRNA
CTGTTCCTTT
TTCCTATGCATATACCTCTTT
GAGATCTAGCTTTAA
AGAGGCATAGGGCATGGGAAAA
TGGGGCT
dot-bracket secondary structure
..(((((.((
(((((((((.(((.(((((((
(((.......)))))
))))).)))..)))))))))))
.))))).
SIMILARITIES
miRBase
dre-mir-202
:
4e-27
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
mir-202: 5e-24
most similar mature miRNAs
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record