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Species belonging to selected taxon:

Ipomoea batatas, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Petunia axillaris subsp. axillaris, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Capsicum annuum, Solanum tuberosum, Ipomoea nil



ABOUT THIS RECORD

ID: MNEST008948
species: Ipomoea nil
miRNA family: MIR157
source: miRNEST

Taxonomy by NCBI:
Ipomoea nil Ipomoea Ipomoeeae Convolvulaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGACAGAAGATAGAGAGCAC

miRNA*
 GCTCTCTACTCTTCTGTCATCA

mismatches: 1
bulges: 1
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pre-miRNA
 TCTCTCTAGCAGGGTGAAGAGACAGCGTGGTGATGAGTTGACAGAAGATAGAGAGCACAGATGATGAGGTACACCGTCCGGTGGCCGGAGCTGAGGATGC
ATGAATGTGATCGGAGAATTGTTAGTATATATATTGTGTGTATCTTCTTCTTTGTGCTCTCTACTCTTCTGTCATCACCGCCGGATTCTCTTCACTCCAT
GTATGTAGCAC

dot-bracket secondary structure
...........(((((((((((....(((((((.....(((((((((((((((((((((((.((.(((((((((..(((((...)))))(((((.(((..
.(((......)))....))).)))))..((.....))))))))))).)).))))))))))))).))))))))))))))))).....)))))))))))..(
((.....))).


SIMILARITIES
miRBase ath-MIR157a: 0.00000000001

PMRD ath-miR157a: 0.00000000001

microPC miR157: 1e-73		UniProt no hits

RFAM no hits		most similar mature miRNAs

Identical with: miR157 from microPC (MNEST045944)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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