miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Antirrhinum majus, Coffea canephora, Fraxinus excelsior, Ipomoea batatas, Mimulus guttatus, Mimulus guttatus var. nasutus, Mimulus lewisii, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Ocimum basilicum, Petunia axillaris subsp. axillaris, Salvia miltiorrhiza, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Striga hermonthica, Triphysaria pusilla, Triphysaria versicolor, Capsicum annuum, Catharanthus roseus, Solanum tuberosum, Ipomoea nil



ABOUT THIS RECORD

ID: MNEST008948
species: Ipomoea nil
miRNA family: MIR157
source: miRNEST

Taxonomy by NCBI:
Ipomoea nil Ipomoea Ipomoeeae Convolvulaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGACAGAAGATAGAGAGCAC

miRNA*
 GCTCTCTACTCTTCTGTCATCA

mismatches: 1
bulges: 1
View larger
pre-miRNA
 TCTCTCTAGCAGGGTGAAGAGACAGCGTGGTGATGAGTTGACAGAAGATAGAGAGCACAGATGATGAGGTACACCGTCCGGTGGCCGGAGCTGAGGATGC
ATGAATGTGATCGGAGAATTGTTAGTATATATATTGTGTGTATCTTCTTCTTTGTGCTCTCTACTCTTCTGTCATCACCGCCGGATTCTCTTCACTCCAT
GTATGTAGCAC

dot-bracket secondary structure
...........(((((((((((....(((((((.....(((((((((((((((((((((((.((.(((((((((..(((((...)))))(((((.(((..
.(((......)))....))).)))))..((.....))))))))))).)).))))))))))))).))))))))))))))))).....)))))))))))..(
((.....))).


SIMILARITIES
miRBase ath-MIR157a: 0.00000000001

PMRD ath-miR157a: 0.00000000001

microPC miR157: 1e-73		UniProt no hits

RFAM no hits		most similar mature miRNAs

Identical with: miR157 from microPC (MNEST045944)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;