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Species belonging to selected taxon:
Solanum habrochaites
,
Solanum lycopersicum
,
Solanum melongena
,
Solanum pennellii
,
Solanum torvum
,
Capsicum annuum
,
Solanum tuberosum
ABOUT THIS RECORD
ID:
MNEST054668
species:
Solanum tuberosum
miRNA family:
MIR172
source:
PMRD, original name:
stu-miR172
Taxonomy by NCBI:
Solanum tuberosum
Solanum
Solaneae
Solanoideae
Solanaceae
Solanales
lamiids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AGAATCTTGATGATGCTGCAT
miRNA*
GCAGCACCATCAAGATTCACA
mismatches:
2
bulges:
0
View larger
pre-miRNA
GT
GCAGCACCATCAAGATTCACA
TAGAAAATATGGACTATGAAATGAAATATGCCCAATTTTTGAATACATG
AGAATCTTGATGATGCTGCAT
dot-bracket secondary structure
((
((((((.(((((((((((.((
(.((((((.(((.((((........))).).)))))))))......)))
.))))))))))).))))))))
SIMILARITIES
miRBase
sbi-MIR172d
:
0.0000003
PMRD
zma-miR172d
:
0.000001
microPC
miR172
:
0.000001
UniProt
no hits
RFAM
mir-172: 0.000005
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
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