miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Sorghum propinquum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST008493
species: Sorghum bicolor
miRNA family: MIR444
source: miRNEST

Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTGTGGCTTTCTTGCAAGTTG

miRNA*
ACTTGCAAGAAAGTCACAAAA

mismatches: 1
bulges: 0

View larger
pre-miRNA
GGTGGCACCAAGCATGAGGCAGGAACTGCATTACTTGCAAGAAAGTCACAAAATCAATTGCAGACCATACTTGTGGCTTTCTTGCAAGTTGTGCAGTTGT
TGCCTCAAGCTTGCTGCCTC


dot-bracket secondary structure
...((((.(((((.((((((((.((((((((.(((((((((((((((((((...................))))))))))))))))))).)))))))).)
))))))).))))).))))..



SIMILARITIES
miRBase ssp-MIR444b: 3e-48

PMRD tae-miR2024b: 4e-19

microPC miR444: 2e-46
UniProt no hits

RFAM MIR444: 3e-39
most similar mature miRNAs

Identical with: miR444 from microPC (MNEST045278)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record





Liczniki na strone;