miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Mus musculus, Sus scrofa, Bos taurus, Rattus norvegicus, Canis lupus familiaris, Ovis aries, Macaca fascicularis, Trichosurus vulpecula, Papio anubis, Homo sapiens, Peromyscus maniculatus bairdii, Pongo abelii, Ursus americanus, Equus caballus, Oryctolagus cuniculus, Macaca nemestrina, Cavia porcellus, Bos indicus, Bos sp., Macropus eugenii, Peromyscus polionotus subgriseus, Capra hircus, Pan troglodytes verus, Macaca mulatta



ABOUT THIS RECORD

ID: MNEST004995
species: Mus musculus
miRNA family: mir-72
source: miRNEST

Taxonomy by NCBI:
Mus musculus Mus Mus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AGGCAGAGGCTGGCAGATCTC

miRNA*
GATCTGCCTCTTTTTGCAGGG

mismatches: 4
bulges: 0

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pre-miRNA
TGAACTTACAGAGATCTGCCTCTTTTTGCAGGGCTCTAAGGTTTGTATCATTGTCTTTGGCCAAACACTGATATTAATGCTCTTTAAAGGAAGAGAGGAG
ATTTGCGTGGTGATGGCACACACTTTTAATGCCAGCACTCATGAGGCAGAGGCTGGCAGATCTCTGTGAATTT


dot-bracket secondary structure
.(((.(((((((((((((((..(((((((.((.((((...(((.((((((.(((..........))).)))))).))).((((((....)))))).))))
..)).(((((((.(((((...........))))).))).))))..)))))))..))))))))))))))).)))



SIMILARITIES
miRBase mmu-mir-3470a: 0.0000000006

PMRD no hits

microPC no hits
UniProt no hits

RFAM Metazoa_SRP: 0.0006
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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