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Species belonging to selected taxon:
Medicago sativa
,
Trifolium pratense
,
Medicago truncatula
ABOUT THIS RECORD
ID:
MNEST040678
species:
Medicago truncatula
miRNA family:
MIR169
source:
miRBase, original name:
mtr-MIR169a
(
MI0001741
)
Taxonomy by NCBI:
Medicago truncatula
Medicago
Trifolieae
Papilionoideae
Fabaceae
Fabales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CAGCCAAGGATGACTTGCCGA
miRNA*
GGCAAGTTGTCCTTGGCTATG
mismatches:
4
bulges:
0
View larger
pre-miRNA
AAGAGGCAGAGAGAGTAATG
CAGCCAAGGATGACTTGCCGA
CAACATTGGCGAATGTTCATGTGATTTCTGCCTCATTGTGCC
GGCAAGTTGTCCTTGGC
TATG
TTAGTCTCTCATCTTCT
dot-bracket secondary structure
.(((((..((((((.((((.
.(((((((((..((((((((.
..(((..((((((...((....)).))).)))....)))..)
)))))))..))))))))
)..)
))).))))))..)))))
SIMILARITIES
miRBase
mtr-MIR169b
:
1e-59
PMRD
mtr-miR169a
:
2e-64
microPC
miR169
:
0.00002
UniProt
no hits
RFAM
MIR169_2: 0.000007
Identical with:
mtr-miR169a
from PMRD (
MNEST048717
)
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
454, Northern
references
[
1
] Dezulian T, Palatnik JF, Huson DH, Weigel D,
http://genomebiology.com/2005/6/11/p13 (2005).
,
"Conservation and divergence of microRNA families in plants"
[
2
] Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R,
New Phytol. 184:85-98(2009).
,
"Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families"