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Species belonging to selected taxon:
Medicago sativa
,
Trifolium pratense
,
Medicago truncatula
ABOUT THIS RECORD
ID:
MNEST008415
species:
Medicago truncatula
miRNA family:
MIR838
source:
miRNEST
Taxonomy by NCBI:
Medicago truncatula
Medicago
Trifolieae
Papilionoideae
Fabaceae
Fabales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCTTCTTCTTCTTCTTGCACC
miRNA*
TGCTAAGAAAAGAGAAGAAACGG
mismatches:
4
bulges:
2
View larger
pre-miRNA
CAACATCTTTA
TCTTCTTCTTCTTCTTGCACC
CCCAAACTATCACTTTTCACACCCCTATATGTTTCATCATCATCACTACACGTTGGATGAACACGGGC
CCCAACAATATCATCACAGCAACCACAGGTACAACGACGCTTCGCCGGAAACATAGTTTCCGCTGACGCTTGAATCCTTCTCCGATGATGCTGCTTCCTC
TTCCTCAACGCTCGGATACAAAGAGTAGCCGGAACTTTATAAATCGCTAGATAAACGATATTCGCCACCGCACATGGAGCACAACAACAAACCGCCGCTG
TTCCACCAACCGCTTCACCGAGGCGCGTACCGGCTTTTAAAGAACTCTTGTTCTGTTGTAGTAGCGGTTGTCGTCGGTTTGACGATTGGACTTGTCTAAG
AACAACCTTACTCGACATATTGGATACTAATCTCTCGAGTCAGACAGAGACTAATTTCTCGAGTCAGATAAATTGTTTGTTTG
TGCTAAGAAAAGAGAAG
AAACGG
AGATA
dot-bracket secondary structure
....((((((.
..((((((((.(((((((((.
..(((((.........((.......((((.(((((...((((((......((((((((((........
..........)))))......(((...))).)))))..((.(((.(((((((...))))))).))).))..(((...)))...))))))(((((((....
.(((.........)))......))))))).)))))..))))(((((.(((((..((((((.((((.((.(((.((((((((............((((.(.
........((((((((...)))))).))).))))..............))))))))))).)).)))).))))))..))))).))))).((((((((((((
......)))((((((...(((((...)))))...)))))).)))))((((......)))).)))).))......)))))...)
))).)))))..))))))
))..))
)))).
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
Source sequences
degradome data
download this record