ABOUT THIS RECORDspecies: Trifolium pratense
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Trifolium pratense Trifolium Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TACTCCCTCTGTCCCAAAATA miRNA* TTTTGGGACAGAGAGAGTAAT mismatches: 1 bulges: 0 |
pre-miRNA
GCCTATTAAGTACTCCCTCTGTCCCAAAATATAAGCAAAAAGGGGTCAACAAAAGTGAATATATTTGGACTAAATTTTAAACCAAATTCATCAACTTTCG
TTGACCACATTTTGCTTATATTTTGGGACAGAGAGAGTAATATATTAT
dot-bracket secondary structure
..........(((((.((((((((((((((((((((((((...(((((((.(((((......((((((.............))))))......))))).)
))))))...)))))))))))))))))))))))).))))).........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GCCTATTAAGTACTCCCTCTGTCCCAAAATATAAGCAAAAAGGGGTCAACAAAAGTGAATATATTTGGACTAAATTTTAAACCAAATTCATCAACTTTCG
TTGACCACATTTTGCTTATATTTTGGGACAGAGAGAGTAATATATTAT
dot-bracket secondary structure
..........(((((.((((((((((((((((((((((((...(((((((.(((((......((((((.............))))))......))))).)
))))))...)))))))))))))))))))))))).))))).........
SIMILARITIES| miRBase osa-MIR1862d: 0.00003 PMRD osa-miRf11090-akr: 0.0000005 microPC miR1439: 0.0001 | UniProt no hits RFAM MIR1122: 0.000000000000002 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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