miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Cucumis melo subsp. melo, Euonymus alatus, Euphorbia esula, Fagus sylvatica, Fragaria vesca, Fragaria x ananassa, Glycine soja, Glycyrrhiza uralensis, Hevea brasiliensis, Humulus lupulus, Jatropha curcas, Juglans hindsii x Juglans regia, Linum usitatissimum, Lotus japonicus, Manihot esculenta, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Prunus armeniaca, Prunus persica, Quercus petraea, Quercus robur, Trifolium pratense, Bruguiera gymnorhiza, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Populus trichocarpa, Phaseolus vulgaris, Ricinus communis, Populus trichocarpa x Populus deltoides

ABOUT THIS RECORD

ID: MNEST040647
species: Lotus japonicus
miRNA family: MIR2111
source: miRBase, original name: lja-MIR2111 (MI0015371)

Taxonomy by NCBI:
Lotus japonicus Lotus Loteae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
TAATCTGCATCCTGAGGTTTA

miRNA*
GTCCTTAGGATGCAGATTACC

mismatches: 1
bulges: 0

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pre-miRNA
TCAAACCTACTTGGATGAGTCAGTATAGGTTTAGGATCAGGTAATCTGCATCCTGAGGTTTAAAACAATAGGTTTATTGTGTCTAGTCCTTAGGATGCAG
ATTACCGCTTCCTAATGTTATCACCAATAGATGGAGCATTTAAATCAGTTTGA

dot-bracket secondary structure
((((((....(((((((..(((.(((.(((((((((...(((((((((((((((((((.(((..((((((....))))))...))).)))))))))))))
))))))...)))))).......))).)))..)))..)))))))....))))))

SIMILARITIES

miRBase mtr-MIR2111s: 2e-21

PMRD bna-miR2111b: 0.0000001

microPC no hits

UniProt no hits

RFAM no hits

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references
[1] Hsieh LC, Lin SI, Shih AC, Chen JW, Lin WY, Tseng CY, Li WH, Chiou TJ, Plant Physiol. 151:2120-2132(2009)., "Uncovering small RNA-mediated responses to phosphate deficiency in Arabidopsis by deep sequencing"