miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Cucumis melo subsp. melo, Eucalyptus globulus, Eucalyptus gunnii, Euonymus alatus, Euphorbia esula, Fagus sylvatica, Fragaria vesca, Fragaria x ananassa, Glycine soja, Glycyrrhiza uralensis, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Hevea brasiliensis, Humulus lupulus, Jatropha curcas, Juglans hindsii x Juglans regia, Limnanthes alba, Linum usitatissimum, Lotus japonicus, Manihot esculenta, Medicago sativa, Paullinia cupana var. sorbilis, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Prunus armeniaca, Prunus persica, Quercus petraea, Quercus robur, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Trifolium pratense, Tropaeolum majus, Vitis shuttleworthii, Bruguiera gymnorhiza, Cajanus cajan, Carica papaya, Cicer arietinum, Citrus clementina, Glycine max, Arabidopsis thaliana, Vigna unguiculata, Vitis vinifera, Medicago truncatula, Brassica oleracea, Populus trichocarpa, Phaseolus vulgaris, Ricinus communis, Populus trichocarpa x Populus deltoides

ABOUT THIS RECORD

ID: MNEST040647
species: Lotus japonicus
miRNA family: MIR2111
source: miRBase, original name: lja-MIR2111 (MI0015371)

Taxonomy by NCBI:
Lotus japonicus Lotus Loteae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
TAATCTGCATCCTGAGGTTTA

miRNA*
GTCCTTAGGATGCAGATTACC

mismatches: 1
bulges: 0

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pre-miRNA
TCAAACCTACTTGGATGAGTCAGTATAGGTTTAGGATCAGGTAATCTGCATCCTGAGGTTTAAAACAATAGGTTTATTGTGTCTAGTCCTTAGGATGCAG
ATTACCGCTTCCTAATGTTATCACCAATAGATGGAGCATTTAAATCAGTTTGA

dot-bracket secondary structure
((((((....(((((((..(((.(((.(((((((((...(((((((((((((((((((.(((..((((((....))))))...))).)))))))))))))
))))))...)))))).......))).)))..)))..)))))))....))))))

SIMILARITIES

miRBase mtr-MIR2111s: 2e-21

PMRD bna-miR2111b: 0.0000001

microPC no hits

UniProt no hits

RFAM no hits

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references
[1] Hsieh LC, Lin SI, Shih AC, Chen JW, Lin WY, Tseng CY, Li WH, Chiou TJ, Plant Physiol. 151:2120-2132(2009)., "Uncovering small RNA-mediated responses to phosphate deficiency in Arabidopsis by deep sequencing"