miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Cucumis melo subsp. melo, Euonymus alatus, Euphorbia esula, Fagus sylvatica, Fragaria vesca, Fragaria x ananassa, Glycine soja, Glycyrrhiza uralensis, Hevea brasiliensis, Humulus lupulus, Jatropha curcas, Juglans hindsii x Juglans regia, Linum usitatissimum, Lotus japonicus, Manihot esculenta, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Prunus armeniaca, Prunus persica, Quercus petraea, Quercus robur, Trifolium pratense, Bruguiera gymnorhiza, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Populus trichocarpa, Phaseolus vulgaris, Ricinus communis, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST001514
species: Manihot esculenta
miRNA family: MIR162
source: miRNEST

Taxonomy by NCBI:
Manihot esculenta Manihot Manihoteae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGATAAACCTCTGCATCCA

miRNA*
GAGGCAGCGGTTCATCGATC

mismatches: 3
bulges: 0

View larger
pre-miRNA
TTGCTGTTTTAGGTTGGGGGTTGAAGTCACTGGAGGCAGCGGTTCATCGATCTCTTCCTGGAGGATTTTGTTGTGAAATTAGCACAAACACATGAATCGA
TCGATAAACCTCTGCATCCA
GCGCTCACCCTCTCCCTTTTTTCTCTCTG


dot-bracket secondary structure
..........(((..((((((...(((..(((((.((((.((((.((((((((((....))))(((((..(((((.......)))))......))))).)
))))).)))).)))).))))
).))).))))))..)))............



SIMILARITIES
miRBase ghr-MIR162a: 3e-33

PMRD ghr-miR162a: 3e-33

microPC miR162: 5e-47
UniProt no hits

RFAM MIR162_2: 1e-26
most similar mature miRNAs

Identical with: miR162 from microPC (MNEST046504)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record





Liczniki na strone;