miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Cucumis melo subsp. melo, Euonymus alatus, Euphorbia esula, Fagus sylvatica, Fragaria vesca, Fragaria x ananassa, Glycine soja, Glycyrrhiza uralensis, Hevea brasiliensis, Humulus lupulus, Jatropha curcas, Juglans hindsii x Juglans regia, Linum usitatissimum, Lotus japonicus, Manihot esculenta, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Prunus armeniaca, Prunus persica, Quercus petraea, Quercus robur, Trifolium pratense, Bruguiera gymnorhiza, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Populus trichocarpa, Phaseolus vulgaris, Ricinus communis, Populus trichocarpa x Populus deltoides

ABOUT THIS RECORD

ID: MNEST040691
species: Medicago truncatula
miRNA family: MIR169_6
source: miRBase, original name: mtr-MIR169n (MI0005636)

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
TGAGCCAAAGATGACTTGCCG

miRNA*
GCAGTTGTCATTGGTTCATG

mismatches: 3
bulges: 1

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pre-miRNA
AGATTTGAGCCAAAGATGACTTGCCGGCATGCTGCCTGAAAAGCAAGAAGGGTGTTGTTTTGCTGGCAGTTGTCATTGGTTCATGTTTG

dot-bracket secondary structure
((((.((((((((.((..(((.(((((((.((.((((............))))...))..))))))))))..)).)))))))).)))).

SIMILARITIES

miRBase mtr-MIR169o: 2e-45

PMRD vvi-miR169p: 0.00007

microPC no hits

UniProt no hits

RFAM MIR169_2: 3e-44

Identical with: mtr-MIR169h from miRBase (MNEST040685)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
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references
[1] Bonnet E, Unpublished (2007).,