miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Antirrhinum majus, Coffea canephora, Fraxinus excelsior, Ipomoea batatas, Mimulus guttatus, Mimulus guttatus var. nasutus, Mimulus lewisii, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Ocimum basilicum, Petunia axillaris subsp. axillaris, Salvia miltiorrhiza, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Striga hermonthica, Triphysaria pusilla, Triphysaria versicolor, Capsicum annuum, Catharanthus roseus, Solanum tuberosum, Ipomoea nil

ABOUT THIS RECORD

ID: MNEST002669
species: Solanum melongena
miRNA family: MIR408
source: miRNEST

Taxonomy by NCBI:
Solanum melongena Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
TGCACTGCCTCTTCCCTGGCT

miRNA*
ACGGGGACGAGACAGAGCATG

mismatches: 4
bulges: 0

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pre-miRNA
AATATGGTGTGGAGTGGATAGACGGGGACGAGACAGAGCATGAGATGTGCAATTTTACTTGCCCATTCCATGCACTGCCTCTTCCCTGGCTCTCCTCTCC
CAACAATCC

dot-bracket secondary structure
....((.((.((((.(((.((.((((((.(((.(((.(((((.((((.((((......)))).)))).))))).))).))).)))))).)).))).))))
)).))....

UniProt no hits

RFAM MIR408: 0.000002

most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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