miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Antirrhinum majus, Coffea canephora, Fraxinus excelsior, Ipomoea batatas, Mimulus guttatus, Mimulus guttatus var. nasutus, Mimulus lewisii, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Ocimum basilicum, Petunia axillaris subsp. axillaris, Salvia miltiorrhiza, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Striga hermonthica, Triphysaria pusilla, Triphysaria versicolor, Capsicum annuum, Catharanthus roseus, Solanum tuberosum, Ipomoea nil



ABOUT THIS RECORD

ID: MNEST046749
species: Solanum tuberosum
source: microPC, original name: miR156

Taxonomy by NCBI:
Solanum tuberosum Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GACAGAAGAGAGTGAGCAC

miRNA*
 GCTCACTTCTCATTCTGTC

mismatches: 0
bulges: 2
View larger
pre-miRNA
 GACAGAAGAGAGTGAGCACACGCAGTCGAATTGTATAAACATTTATACAATTGTCATTTGCGTGTGCTCACTTCTCATTCTGTC

dot-bracket secondary structure
(((((((((((((((((((((((((..(((((((((((....)))))))))..))..)))))))))))))).)))).)))))))


SIMILARITIES
miRBase ctr-MIR156: 0.0000002

PMRD stu-miR156a: 2e-42

microPC miR156: 2e-42		UniProt no hits

RFAM mir-156: 0.000004

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record




Liczniki na strone;