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Species belonging to selected taxon:

Antirrhinum majus, Coffea canephora, Fraxinus excelsior, Ipomoea batatas, Mimulus guttatus, Mimulus guttatus var. nasutus, Mimulus lewisii, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Ocimum basilicum, Petunia axillaris subsp. axillaris, Salvia miltiorrhiza, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Striga hermonthica, Triphysaria pusilla, Triphysaria versicolor, Capsicum annuum, Catharanthus roseus, Solanum tuberosum, Ipomoea nil



ABOUT THIS RECORD

ID: MNEST007388
species: Solanum tuberosum
miRNA family: MIR399
source: miRNEST

Taxonomy by NCBI:
Solanum tuberosum Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGCCAAAGGAGAGCTGCCCTG

miRNA*
GGGCTACTCTCTATTGGCATG

mismatches: 3
bulges: 0

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pre-miRNA
AATTTATAAGGGAAACAGTGGTAGGGCTACTCTCTATTGGCATGCAGTGATATATTTAAGCTGACATGCCAAAGGAGAGCTGCCCTGTTACTGTCTCTGT
TTAGTGT


dot-bracket secondary structure
..........(((.(((((((((((((..((((((.((((((((((((...........)))).)))))))).))))))..))))))))))))).)))..
.......



SIMILARITIES
miRBase sly-MIR399: 0.0000003

PMRD sly-miR399: 0.0000003

microPC miR399: 1e-31
UniProt no hits

RFAM mir-399: 0.00009
most similar mature miRNAs

Identical with: miR399 from microPC (MNEST046131)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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