Parental gene:

COX4I1, ENSBTAG00000016079

Aliases:COX4I1, COX4
Description:Cytochrome c oxidase subunit 4 isoform 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P00423]
Organism:Cow (Bos taurus)
Coordinates:18:11799174..11807341(+)


>ENSBTAG00000016079
ATGTTGGCAACCAGAGTATTTAGCCTGATTGGTAGGCGTGCAATTTCCACCTCGGTGTGTGTTCGGGCCCATGGAAGTGT
TGTAAAGAGTGAAGATTATGCTCTCCCGAGTTATGTGGACCGGCGTGACTACCCCTTGCCCGACGTGGCCCATGTCAAGA
ACCTGTCTGCCAGCCAGAAGGCCTTGAAGGAGAAGGAGAAGGCTTCCTGGAGCAGCCTCTCCATTGATGAGAAAGTTGAA
CTGTACCGCCTTAAGTTCAAGGAGAGCTTCGCCGAGATGAACAGGAGCACAAATGAGTGGAAGACGGTGGTGGGCGCGGC
CATGTTCTTCATCGGCTTCACCGCGCTCCTCCTCATCTGGGAGAAGCACTATGTGTACGGCCCCATCCCGCACACCTTTG
AAGAGGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTCGACATGAAGGTGGCCCCCATCCAGGGCTTCTCGGCCAAGTGG
GACTACGACAAGAACGAGTGGAAGAAGTAA

Library Parental gene expression (RPM)
SRP017611_brain 131 .78 RPM
SRP017611_kidney 203 .42 RPM
SRP017611_liver 81 .10 RPM
ERP005899_muscle 551 .22 RPM
ERP005899_liver 30 .42 RPM
SRP030211_testis 238 .11 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000005479 ortholog_one2one 1 retrogene
retro_acar_90,
Ailuropoda melanoleuca ENSAMEG00000018274 ortholog_one2many 1 retrogene
retro_amel_470,
Canis familiaris ENSCAFG00000019921 ortholog_one2one 2 retrogenes
retro_cfam_1259, retro_cfam_1906,
Callithrix jacchus ENSCJAG00000017319 ortholog_one2one 4 retrogenes
retro_cjac_2267, retro_cjac_3264, retro_cjac_3300, retro_cjac_802,
Dasypus novemcinctus ENSDNOG00000017207 ortholog_one2one 3 retrogenes
retro_dnov_2207, retro_dnov_2396, retro_dnov_737,
Equus caballus ENSECAG00000011722 ortholog_one2one 1 retrogene
retro_ecab_418,
Felis catus ENSFCAG00000007612 ortholog_one2many 2 retrogenes
retro_fcat_1484, retro_fcat_853,
Homo sapiens ENSG00000131143 ortholog_one2one 1 retrogene
retro_hsap_1428,
Gorilla gorilla ENSGGOG00000010047 ortholog_one2one 1 retrogene
retro_ggor_1101,
Loxodonta africana ENSLAFG00000014002 ortholog_one2one 1 retrogene
retro_lafr_528,
Macaca mulatta ENSMMUG00000006763 ortholog_one2one 4 retrogenes
retro_mmul_1129, retro_mmul_1285, retro_mmul_1724, retro_mmul_2260,
Mus musculus ENSMUSG00000031818 ortholog_one2one 2 retrogenes
retro_mmus_1305, retro_mmus_2958,
Nomascus leucogenys ENSNLEG00000011409 ortholog_one2one 1 retrogene
retro_nleu_1843,
Oryctolagus cuniculus ENSOCUG00000001735 ortholog_one2one 5 retrogenes
retro_ocun_1238, retro_ocun_1333, retro_ocun_317, retro_ocun_469, retro_ocun_889,
Ochotona princeps ENSOPRG00000002129 ortholog_one2one 4 retrogenes
retro_opri_1205, retro_opri_267, retro_opri_821, retro_opri_857,
Pongo abelii ENSPPYG00000007619 ortholog_one2many 3 retrogenes
retro_pabe_1183, retro_pabe_1184, retro_pabe_996,
Pan troglodytes ENSPTRG00000008434 ortholog_one2one 1 retrogene
retro_ptro_977,
Rattus norvegicus ENSRNOG00000017817 ortholog_one2one 1 retrogene
retro_rnor_1157,
Tarsius syrichta ENSTSYG00000009682 ortholog_one2one 2 retrogenes
retro_tsyr_2073, retro_tsyr_591,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_483 54.17 68.05
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2. retro_btau_1406 87.57 99.41
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Download FASTA sequences of all ENSBTAG00000016079 retrocopies