RetrogeneDB ID: | retro_dnov_737 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_103205:3235..3667(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | COX4I1 | ||
Ensembl ID: | ENSDNOG00000017207 | ||
Aliases: | None | ||
Description: | cytochrome c oxidase subunit IV isoform 1 [Source:HGNC Symbol;Acc:2265] |
Percent Identity: | 66.89 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | SVVKSANFA-LPAYVDRRDYPLPDVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRMKFKESFAEMN |
S.VKS...A...AYV...DYPL.DVAHVKH.S..QKALKEKEKASWS.LS.DEKV..Y..KFK.SFAEMN | |
Retrocopy | SIVKSEAYA<FSAYVYQCDYPLLDVAHVKHMSVRQKALKEKEKASWSRLSIDEKV*FYHTKFKGSFAEMN |
Parental | RGTNEWKTVVGAALFFIG-FTGLILIWEKHYVYG-PIPHTFDEDW-VAKQTKRMLDMKVSPIQGFSAKWD |
R..NEWK..VG.ALFF.G..T.L..IWE..YV.G.PIP.TF.EDW..AKQT..ML.MKVS..Q.FS.KWD | |
Retrocopy | RSPNEWKMIVGTALFFTGVVTALFQIWE*CYVCG<PIPDTFEEDW<AAKQTNTMLGMKVSSVQKFSPKWD |
Parental | YDKNEWKK |
YDK.E.KK | |
Retrocopy | YDKKE*KK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 559 .68 RPM |
SRP012922_cerebellum | 0 .00 RPM | 280 .44 RPM |
SRP012922_heart | 0 .00 RPM | 946 .92 RPM |
SRP012922_kidney | 0 .00 RPM | 481 .88 RPM |
SRP012922_liver | 0 .00 RPM | 210 .38 RPM |
SRP012922_lung | 0 .00 RPM | 260 .09 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 707 .22 RPM |
SRP012922_spleen | 0 .00 RPM | 254 .22 RPM |