RetrogeneDB ID: | retro_mmus_1305 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 14:101572526..101573016(-) | ||
Located in intron of: | ENSMUSG00000033083 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Cox4i1 | ||
Ensembl ID: | ENSMUSG00000031818 | ||
Aliases: | Cox4i1, AL024441, COXIV, Cox4, Cox4a | ||
Description: | cytochrome c oxidase subunit IV isoform 1 [Source:MGI Symbol;Acc:MGI:88473] |
Percent Identity: | 62.57 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | MLASRALSLIGKRAI-STSVCLRAHGSVVKSEDYAFPTYADRRDYPLPDVAHVTMLSASQKALKEKEKAD |
ML..R.LS..GK.AI.S.SVC..AHG.VVKSED.A.P.Y....D..LPDVAH...LS.S.K.LK..EKAD | |
Retrocopy | MLTTRTLSPVGKAAI<SISVCV*AHGKVVKSED*ALPIY----DFALPDVAHIRLLSTSHKTLKV-EKAD |
Parental | WSSLSR-DEKVQLYRIQFNESFAEMNRGTNEWKTVVGMAMFFIGFTALVLIWEKSYVYGPIPHTFDRDWV |
W..LSR.DEK.QLY.IQF..S.AE.NRGT..WKTVV.MAM.FI.F.A...IWE...V.GPIP.TFDRD.V | |
Retrocopy | WGILSR<DEKFQLYCIQFSKSSAEINRGTDRWKTVVSMAMLFIDFMASIPIWEMHSVNGPIPQTFDRDRV |
Parental | AMQTKRMLDMKANPIQGFSAKWDYDKNEWKK |
.MQ...ML..K.NPI..FS.KWD.DKNEWK. | |
Retrocopy | TMQSNQMLRRKVNPI*DFSTKWDQDKNEWKQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .02 RPM | 287 .39 RPM |
SRP007412_cerebellum | 0 .09 RPM | 312 .11 RPM |
SRP007412_heart | 0 .00 RPM | 988 .32 RPM |
SRP007412_kidney | 0 .00 RPM | 664 .69 RPM |
SRP007412_liver | 0 .00 RPM | 237 .53 RPM |
SRP007412_testis | 0 .00 RPM | 149 .57 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_32052 | 540 libraries | 450 libraries | 82 libraries | 0 libraries | 0 libraries |
Species | RetrogeneDB ID |
---|---|
Rattus norvegicus | retro_rnor_1157 |