RetrogeneDB ID: | retro_tsyr_591 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_144879:306..794(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | COX4I1 | ||
Ensembl ID: | ENSTSYG00000009682 | ||
Aliases: | None | ||
Description: | cytochrome c oxidase subunit IV isoform 1 [Source:HGNC Symbol;Acc:2265] |
Percent Identity: | 64.12 % |
Parental protein coverage: | 98.22 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | MLATRVFSLVGKRALS-TSVCVRAHGSVVKSEDYALPSYVDRRDYPLPDVAHVKHLSASQKALKEKEKAS |
MLATRV..L.GK.AL..T.VCVRA.GSV.KSED.ALPS.VD..DY.LPDV.H.KHLSASQKAL..KEK.. | |
Retrocopy | MLATRVLCLFGKQALP<TLVCVRARGSVAKSEDCALPSCVD*HDYCLPDVPHGKHLSASQKAL--KEKEK |
Parental | WSSLSLDEKV-ELYRIQFNESFAEMNRGTNEWKTVVGAAMFFIGFTALVIIWEKHYVYG-PIP-HTFDKD |
.S...L.....EL..IQFNESFAEMNR.T...K.V.G.A.FF.GFTAL..IWEKH...G.P.P.H..... | |
Retrocopy | ASWSNLSRDE<ELCHIQFNESFAEMNRDTDGRKMVTGTAVFFVGFTALMSIWEKHDAQG<PRP<HMPSRK |
Parental | WVAMQTKRMLDMKVNPIQGFSAKWDYDKNE |
..AMQT.RMLDMK..PI.GFSAKW.YDK.E | |
Retrocopy | TMAMQTERMLDMKISPIRGFSAKWGYDKSE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |