RetrogeneDB ID: | retro_acar_90 | ||
Retrocopylocation | Organism: | Anole lizard (Anolis carolinensis) | |
Coordinates: | 2:60175761..60176045(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | COX4I1 | ||
Ensembl ID: | ENSACAG00000005479 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 82.29 % |
Parental protein coverage: | 55.88 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MLASRAFSLLGKRAISTSVCLRAHGHGVVK-TEDFSLPSYVDRRDIPLPDVAYTKALSSGQKALKEKEKA |
ML.SR..SLLGKR..STSVC.RAHGHG.VK.TEDFSLPSY.D..DIPL..V.Y.KALSSGQKALKEKEK. | |
Retrocopy | MLVSRVYSLLGKRVVSTSVCFRAHGHGIVK<TEDFSLPSYFDCQDIPLLEVVYVKALSSGQKALKEKEKV |
Parental | SWSALSLEDKVELYRIKFHESFAEMN |
SW.ALSLEDKVELYRIKFHESFAEMN | |
Retrocopy | SWNALSLEDKVELYRIKFHESFAEMN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP009831_adrenal | 0 .00 RPM | 169 .89 RPM |
SRP009831_brain | 0 .00 RPM | 234 .14 RPM |
SRP009831_dewlap | 0 .00 RPM | 84 .54 RPM |
SRP009831_embryo | 0 .00 RPM | 144 .46 RPM |
SRP009831_heart | 0 .00 RPM | 172 .51 RPM |
SRP009831_liver | 0 .00 RPM | 87 .53 RPM |
SRP009831_lung | 0 .00 RPM | 87 .30 RPM |
SRP009831_ovary | 0 .00 RPM | 82 .39 RPM |
SRP009831_skeletal_muscle | 0 .00 RPM | 113 .13 RPM |