RetrogeneDB ID: | retro_mmus_2958 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 7:100624517..100624958(+) | ||
Located in intron of: | ENSMUSG00000030704 | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000082210 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Cox4i1 | ||
Ensembl ID: | ENSMUSG00000031818 | ||
Aliases: | Cox4i1, AL024441, COXIV, Cox4, Cox4a | ||
Description: | cytochrome c oxidase subunit IV isoform 1 [Source:MGI Symbol;Acc:MGI:88473] |
Percent Identity: | 67.32 % |
Parental protein coverage: | 88.17 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | MLASRALSLIGKRAISTSVCLR-AHGSVVKSEDYAFPTYADRRDYP-LPDVAHVTMLSASQKALKEKEKA |
M.A.RALSLIGKRAISTSV.....HGSV.KSEDYA.P...D..D.P..P.VAHV..LSAS.KALK..EKA | |
Retrocopy | MMATRALSLIGKRAISTSVYVL>SHGSVIKSEDYALPGCVDMHDHP<MPGVAHVRLLSAS*KALK--EKA |
Parental | DW-SSLSRDEKVQLYRIQFNESFAEMNRGTNEWKTVVGMAMFFIGFT-ALVLIWEKSYVYGPIPHTFDRD |
...SSLS...KVQLY.IQFN.SFA.MNR.TNEWKT.VG.AMFF.GF..AL.L.WEK...Y.PIPH.FD.D | |
Retrocopy | GL>SSLSSHDKVQLYCIQFNKSFAKMNRSTNEWKTLVGVAMFFMGFM<ALILMWEKHHGYSPIPHSFDGD |
Parental | WVAMQTKRMLDMK |
WVAMQ...MLD.K | |
Retrocopy | WVAMQSQQMLDKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .07 RPM | 287 .39 RPM |
SRP007412_cerebellum | 0 .04 RPM | 312 .11 RPM |
SRP007412_heart | 0 .00 RPM | 988 .32 RPM |
SRP007412_kidney | 0 .02 RPM | 664 .69 RPM |
SRP007412_liver | 0 .00 RPM | 237 .53 RPM |
SRP007412_testis | 0 .00 RPM | 149 .57 RPM |