RetrogeneDB ID: | retro_ocun_317 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 1:151009533..151009904(+) | ||
Located in intron of: | ENSOCUG00000016329 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | COX4I1 | ||
Ensembl ID: | ENSOCUG00000001735 | ||
Aliases: | None | ||
Description: | cytochrome c oxidase subunit 4 isoform 1, mitochondrial precursor [Source:RefSeq peptide;Acc:NP_001164353] |
Percent Identity: | 52. % |
Parental protein coverage: | 72.78 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | RAHGNVVKSEDYALPSYVDRRDYPLPDVAHVKQLSASQKALKEKEKAPWGSLTRDEKVELYRIQFNESFA |
RAH...VKS.DY..P......DY.LP..AHVK.LSA.QKALKEKEKA...S.T.DEKV.LY.I..N.SFA | |
Retrocopy | RAHRSAVKSDDYVHPH*INQCDYLLPSLAHVKHLSAIQKALKEKEKASRNSFTKDEKVKLYHIHLNDSFA |
Parental | EMNRGTNEWKTVVGTALFFIGFTALI-LIWEKHYVYGPIPHTF-DKEWVAMQTKR |
E.N.....WK.VVG..........L..L..E......PIP.T..DKE.VA.QT.R | |
Retrocopy | EINKDMDKWKMVVGMGIVDSSMASLL*L*SERNTTCVPIPYTL<DKEVVARQTFR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 308 .39 RPM |
SRP017611_kidney | 0 .00 RPM | 469 .89 RPM |
SRP017611_liver | 0 .00 RPM | 70 .22 RPM |