Parental gene:

VPS26A, ENSCAFG00000013827

Aliases:None
Description:vacuolar protein sorting 26 homolog A (S. pombe) [Source:HGNC Symbol;Acc:12711]
Organism:Dog (Canis familiaris)
Coordinates:4:20265547..20296398(+)


>ENSCAFG00000013827
ATGAAAAGACACTGGTTTTGTGCCCGCTGCTTTAAGAGTTTTCTTGGAGGCTTTTTTGGACCCATTTGTGAGATTGATGT
TGTCCTTAATGATGGGGAAACCAGAAAAATGGCTGAAATGAAAACTGAAGATGGCAAAGTAGAAAAACACTATCTTTTCT
ATGATGGAGAATCCGTTTCAGGAAAGGTAAACCTAGCCTTTAAGCAACCTGGAAAGAGGCTAGAGCACCAAGGAATTAGA
ATTGAATTTGTAGGTCAAATTGAACTTTTCAATGACAAGAGTAATACTCATGAATTTGTAAACCTAGTGAAAGAACTAGC
CTTGCCTGGAGAATTGACTCAGAGCAGAAGTTATGATTTTGAATTTATGCAAGTTGAAAAGCCATATGAATCTTACATCG
GTGCCAATGTCCGCTTGAGGTATTTTCTTAAAGTGACAATAGTAAGAAGACTGACAGACTTGGTAAAAGAATATGATCTT
ATTGTTCACCAGCTTGCCACATACCCTGATGTTAACAACTCTATTAAGATGGAAGTGGGTATTGAAGATTGTCTACACAT
AGAATTTGAATATAATAAATCAAAGTATCATCTAAAGGATGTGATTGTTGGAAAAATTTACTTTTTATTAGTAAGAATAA
AAATCCAACATATGGAGTTACAGCTGATCAAAAAAGAGATCACAGGAATTGGACCCAGTACCACCACAGAAACAGAAACA
ATTGCAAAATATGAAATAATGGATGGTGCACCCGTAAAAGGTGAATCAATTCCAATAAGACTATTTTTAGCGGGATATGA
CCCAACTCCAACAATGAGAGATGTGAACAAAAAATTTTCAGTAAGGTACTTTTTGAATCTAGTCCTTGTTGATGAGGAAG
ACAGAAGGTACTTCAAGCAGCAGGAGATCATTTTATGGAGAAAAGCTCCAGAAAAATTGAGGAAACAGAGAACAAACTTC
CACCAGCGATTTGAATCACCAGAATCACAGGCATCTCCTGAACAGCCTGAAATGTGA

Library Parental gene expression (RPM)
SRP017611_brain 41 .20 RPM
SRP017611_kidney 90 .21 RPM
SRP017611_liver 21 .90 RPM
SRP012049_cerebellum 42 .84 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000007324 ortholog_one2one 5 retrogenes
retro_chof_1303, retro_chof_1663, retro_chof_1796, retro_chof_2352, retro_chof_242,
Callithrix jacchus ENSCJAG00000012907 ortholog_one2one 1 retrogene
retro_cjac_1420,
Equus caballus ENSECAG00000009507 ortholog_one2many 1 retrogene
retro_ecab_17,
Homo sapiens ENSG00000122958 ortholog_one2one 1 retrogene
retro_hsap_2688,
Gorilla gorilla ENSGGOG00000010433 ortholog_one2one 1 retrogene
retro_ggor_1875,
Microcebus murinus ENSMICG00000014940 ortholog_one2one 1 retrogene
retro_mmur_1070,
Mustela putorius furo ENSMPUG00000004519 ortholog_one2many 1 retrogene
retro_mputfur_146,
Nomascus leucogenys ENSNLEG00000011548 ortholog_one2one 1 retrogene
retro_nleu_1187,
Pongo abelii ENSPPYG00000002386 ortholog_one2one 1 retrogene
retro_pabe_2293,
Pan troglodytes ENSPTRG00000002567 ortholog_one2one 3 retrogenes
retro_ptro_1815, retro_ptro_2245, retro_ptro_4,
Tupaia belangeri ENSTBEG00000015348 ortholog_one2one 1 retrogene
retro_tbel_1425,
Vicugna pacos ENSVPAG00000000630 ortholog_one2one 1 retrogene
retro_vpac_385,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_1133 84.76 96.75
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Download FASTA sequences of all ENSCAFG00000013827 retrocopies