RetrogeneDB ID: | retro_hsap_2688 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 3:113638068..113639044(+) | ||
Located in intron of: | ENSG00000178075 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000240375 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | VPS26A | ||
Ensembl ID: | ENSG00000122958 | ||
Aliases: | VPS26A, HB58, Hbeta58, PEP8A, VPS26 | ||
Description: | vacuolar protein sorting 26 homolog A (S. pombe) [Source:HGNC Symbol;Acc:12711] |
Percent Identity: | 85.24 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 5 |
Parental | MSFLGGFFGPICEIDI-VLNDGETRKMAEMKTEDGKVEKHYLF-YDGESVSGKVNLAFKQPGKRLEHQGI |
MSFL.GFFGP.CEID..V.NDGE.RKM.EMKTEDGKVEKH.LF.Y.GESVSGKVN.AFKQPG.RLEHQGI | |
Retrocopy | MSFLEGFFGPVCEIDM<VFNDGEARKMTEMKTEDGKVEKHHLF<YNGESVSGKVNVAFKQPG*RLEHQGI |
Parental | RIEFVGQIELFNDKSNTHEFVNLVKELALPGELTQSRSYDFEFMQVEKPYESYIGANVRLRYFLKVTIVR |
RIEF.GQ.EL.NDKSN.HEF.NL.KELALPGELTQ.RSYDFEFMQV.KPY.S.IGA.V.LRYFLKVTIVR | |
Retrocopy | RIEFIGQMELYNDKSNAHEFINLMKELALPGELTQRRSYDFEFMQVKKPYASDIGASVHLRYFLKVTIVR |
Parental | RLTDLVKEYDLIVHQLATYPDVNNSIKMEVGIEDCLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIQHME |
RLTDLVKE.DLIVHQLAT.PDVNN.IK.EVGIEDCLHI.FEY.KSKYHLK.VIVGKIYFL.VRIKIQHME | |
Retrocopy | RLTDLVKECDLIVHQLATCPDVNNCIKIEVGIEDCLHI*FEYSKSKYHLKHVIVGKIYFLVVRIKIQHME |
Parental | LQLIKKEITGIGPSTTTETET-IAKYEIMDGAPVKGESIPIRLFLAGYDPTPTMRDV-NKKF-SVRYFLN |
LQLIKKEITGIGPSTT.ETET.I.KYEIMDGAPVKGESIP.RLFL.GYDPTPT.R....KKF.SVRYFLN | |
Retrocopy | LQLIKKEITGIGPSTTAETET<ITKYEIMDGAPVKGESIPMRLFLVGYDPTPTIRCE<TKKF<SVRYFLN |
Parental | LVLVDEEDRRYFKQQEIILWRKAPEKLRKQRTNFHQRFESPESQASAEQPEM |
LV.VDEED.RYFKQQEIIL.RKAPEKLRKQR.NFHQ.FESPESQASA.QPEM | |
Retrocopy | LVFVDEED*RYFKQQEIIL*RKAPEKLRKQRKNFHQ*FESPESQASAQQPEM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 85 .65 RPM |
bodymap2_adrenal | 0 .14 RPM | 68 .86 RPM |
bodymap2_brain | 0 .00 RPM | 81 .71 RPM |
bodymap2_breast | 0 .00 RPM | 110 .68 RPM |
bodymap2_colon | 0 .06 RPM | 97 .94 RPM |
bodymap2_heart | 0 .00 RPM | 55 .86 RPM |
bodymap2_kidney | 0 .00 RPM | 97 .20 RPM |
bodymap2_liver | 0 .00 RPM | 37 .47 RPM |
bodymap2_lung | 0 .00 RPM | 85 .43 RPM |
bodymap2_lymph_node | 0 .42 RPM | 62 .68 RPM |
bodymap2_ovary | 0 .04 RPM | 100 .59 RPM |
bodymap2_prostate | 0 .00 RPM | 109 .12 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 54 .45 RPM |
bodymap2_testis | 0 .00 RPM | 130 .37 RPM |
bodymap2_thyroid | 0 .09 RPM | 98 .00 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 82 .37 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_1815 |
Gorilla gorilla | retro_ggor_1875 |
Pongo abelii | retro_pabe_2293 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000013827 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000007324 | 5 retrocopies | |
Callithrix jacchus | ENSCJAG00000012907 | 1 retrocopy | |
Equus caballus | ENSECAG00000009507 | 1 retrocopy | |
Homo sapiens | ENSG00000122958 | 1 retrocopy |
retro_hsap_2688 ,
|
Gorilla gorilla | ENSGGOG00000010433 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000014940 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000004519 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000011548 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000002386 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000002567 | 3 retrocopies | |
Tupaia belangeri | ENSTBEG00000015348 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000000630 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .03 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |