RetrogeneDB ID: | retro_chof_1303 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_25550:10933..11407(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | VPS26A | ||
Ensembl ID: | ENSCHOG00000007324 | ||
Aliases: | None | ||
Description: | vacuolar protein sorting 26 homolog A (S. pombe) [Source:HGNC Symbol;Acc:12711] |
Percent Identity: | 92.45 % |
Parental protein coverage: | 55.59 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | GIQDCLHIQFEYNKSKYHLKDVIVGKIYFLLVRIKIQHMELQLIKKEITGIGPSTTTETETIAKYEIMDG |
GI.DCLHI.FEYNKSKYHLKDVIVGKIY.LL.RIKIQHMELQLIKKEITG.GPSTTTETETIAKYEIMDG | |
Retrocopy | GIEDCLHIEFEYNKSKYHLKDVIVGKIY-LLIRIKIQHMELQLIKKEITGVGPSTTTETETIAKYEIMDG |
Parental | APVKGESIPIRLFLAGYDPTPTMRDVNKKFSVRYFLNLVLVDEEDRRYFKQQEIILWRKAPEKLRKQRIN |
.PVKGESIPIRLFL.GYDPTPTMRDVNKKFSVRYFLNLVLVDEEDRRYFKQQEIILWR.APEKLRKQR.N | |
Retrocopy | VPVKGESIPIRLFLSGYDPTPTMRDVNKKFSVRYFLNLVLVDEEDRRYFKQQEIILWREAPEKLRKQRPN |
Parental | FHQRFESPESQASAEQPEM |
FHQ.FESPESQAS.EQPE. | |
Retrocopy | FHQQFESPESQASVEQPEI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000013827 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000007324 | 5 retrocopies | |
Callithrix jacchus | ENSCJAG00000012907 | 1 retrocopy | |
Equus caballus | ENSECAG00000009507 | 1 retrocopy | |
Homo sapiens | ENSG00000122958 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000010433 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000014940 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000004519 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000011548 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000002386 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000002567 | 3 retrocopies | |
Tupaia belangeri | ENSTBEG00000015348 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000000630 | 1 retrocopy |