Parental gene: | VPS26A, ENSPTRG00000002567 |
| Aliases: | None |
| Description: | None |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 10:67589057..67638142(+) |
>ENSPTRG00000002567
ATGAGTTTTCTTGGAGGCTTTTTTGGTCCAATTTGTGAGATCGATATTGTTCTTAATGATGGGGAAACCAGGAAAATGGC
AGAAATGAAAACTGAAGATGGCAAAGTAGAAAAACACTATCTCTTCTATGACGGAGAATCTGTTTCAGGAAAGGTAAACC
TAGCCTTTAAGCAACCTGGAAAGAGGCTAGAACACCAAGGAATTAGAATTGAATTTGTAGGTCAAATTGAACTTTTCAAT
GACAAGAGTAATACTCATGAATTTGTAAACCTAGTGAAAGAACTAGCCTTACCTGGAGAACTGACTCAGAGCAGAAGTTA
TGATTTTGAATTTATGCAAGTTGAAAAGCCATATGAATCTTACATCGGTGCCAATGTCCGCTTGAGGTATTTTCTTAAAG
TGACAATAGTGAGAAGACTGACAGATTTGGTAAAAGAGTATGATCTTATTGTTCACCAGCTTGCCACCTATCCTGATGTT
AACAACTCTATTAAGATGGAAGTGGGCATTGAAGATTGTCTACATATAGAATTTGAATATAATAAATCAAAGTATCATTT
AAAGGATGTGATTGTTGGAAAAATTTACTTCTTATTAGTAAGAATAAAAATACAACATATGGAGTTACAGCTGATCAAAA
AAGAGATCACAGGAATTGGACCCAGTACCACAACAGAAACAGAAACAATCGCCAAATATGAAATAATGGATGGTGCACCA
GTAAAAGGTGAATCAATTCCAATAAGGCTATTTTTAGCAGGATATGACCCAACTCCAACAATGAGAGATGTGAACAAAAA
ATTTTCAGTAAGGTACTTTTTGAATTTAGTGCTTGTTGATGAGGAAGACCGGAGGTACTTCAAACAGCAGGAGATAATTT
TATGGAGAAAAGCTCCTGAAAAACTGAGGAAACAGAGAACAAACTTTCACCAGCGATTTGAATCTCCAGAATCACAGGCA
TCTGCCGAACAGCCTGAAATGTGA
ATGAGTTTTCTTGGAGGCTTTTTTGGTCCAATTTGTGAGATCGATATTGTTCTTAATGATGGGGAAACCAGGAAAATGGC
AGAAATGAAAACTGAAGATGGCAAAGTAGAAAAACACTATCTCTTCTATGACGGAGAATCTGTTTCAGGAAAGGTAAACC
TAGCCTTTAAGCAACCTGGAAAGAGGCTAGAACACCAAGGAATTAGAATTGAATTTGTAGGTCAAATTGAACTTTTCAAT
GACAAGAGTAATACTCATGAATTTGTAAACCTAGTGAAAGAACTAGCCTTACCTGGAGAACTGACTCAGAGCAGAAGTTA
TGATTTTGAATTTATGCAAGTTGAAAAGCCATATGAATCTTACATCGGTGCCAATGTCCGCTTGAGGTATTTTCTTAAAG
TGACAATAGTGAGAAGACTGACAGATTTGGTAAAAGAGTATGATCTTATTGTTCACCAGCTTGCCACCTATCCTGATGTT
AACAACTCTATTAAGATGGAAGTGGGCATTGAAGATTGTCTACATATAGAATTTGAATATAATAAATCAAAGTATCATTT
AAAGGATGTGATTGTTGGAAAAATTTACTTCTTATTAGTAAGAATAAAAATACAACATATGGAGTTACAGCTGATCAAAA
AAGAGATCACAGGAATTGGACCCAGTACCACAACAGAAACAGAAACAATCGCCAAATATGAAATAATGGATGGTGCACCA
GTAAAAGGTGAATCAATTCCAATAAGGCTATTTTTAGCAGGATATGACCCAACTCCAACAATGAGAGATGTGAACAAAAA
ATTTTCAGTAAGGTACTTTTTGAATTTAGTGCTTGTTGATGAGGAAGACCGGAGGTACTTCAAACAGCAGGAGATAATTT
TATGGAGAAAAGCTCCTGAAAAACTGAGGAAACAGAGAACAAACTTTCACCAGCGATTTGAATCTCCAGAATCACAGGCA
TCTGCCGAACAGCCTGAAATGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 21 .41 RPM |
| SRP007412_cerebellum | 16 .31 RPM |
| SRP007412_heart | 8 .69 RPM |
| SRP007412_kidney | 18 .02 RPM |
| SRP007412_liver | 8 .51 RPM |
| SRP007412_testis | 30 .67 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000013827 | ortholog_one2one | 1 retrogene | |
| Choloepus hoffmanni | ENSCHOG00000007324 | ortholog_one2one | 5 retrogenes | |
| Callithrix jacchus | ENSCJAG00000012907 | ortholog_one2one | 1 retrogene | |
| Equus caballus | ENSECAG00000009507 | ortholog_one2many | 1 retrogene | |
| Homo sapiens | ENSG00000122958 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000010433 | ortholog_one2one | 1 retrogene | |
| Microcebus murinus | ENSMICG00000014940 | ortholog_one2one | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000004519 | ortholog_one2many | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000011548 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000002386 | ortholog_one2one | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000015348 | ortholog_one2one | 1 retrogene | |
| Vicugna pacos | ENSVPAG00000000630 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_4 | 69.51 | 99.39 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_1815 | 84.64 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ptro_2245 | 100.00 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000002567 retrocopies