RetrogeneDB ID: | retro_ptro_4 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 9:117646443..117647454(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSPTRG00000004494 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | VPS26A | ||
Ensembl ID: | ENSPTRG00000002567 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 69.51 % |
Parental protein coverage: | 99.39 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSFLGGFFGPICEIDIVLNDGETRKMAEMKTEDGKVEKHYLFYDGESVSGKVNLAFKQPGKRLEHQGIRI |
MSF.G..FG...E..I.LND.E.RK.AE.KTEDGK.EK..LFY.GE.VSGKV.LA.K.P.KRLEHQGI.I | |
Retrocopy | MSFFG--FGQSVEVEILLNDAESRKRAEHKTEDGKKEKYFLFYNGETVSGKVSLALKNPNKRLEHQGIKI |
Parental | EFVGQIELFNDKSNTHEFVNLVKELALPGELTQSRSYDFEFMQVEKPYESYIGANVRLRYFLKVTIVRRL |
EF.GQIEL..D..N.HEFV.LVK.LA.PGE.TQS...DFEF..VEKPYESY.G.NV.LRYFL..TI.RRL | |
Retrocopy | EFIGQIELYYDRGNHHEFVSLVKDLARPGEITQSQAFDFEFTHVEKPYESYTGQNVKLRYFLRATISRRL |
Parental | TDLVKEYDLIVHQLATYPDVNNSIKMEVGIEDCLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIQHMELQ |
.D.VKE.D..VH.L.TYP..N.SIKMEVGIEDCLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKI.HME.. | |
Retrocopy | NDVVKEMDIVVHTLSTYPELNSSIKMEVGIEDCLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIKHMEID |
Parental | LIKKEITGIGPSTTTETETIAKYEIMDGAPVKGESIPIRLFLAGYDPTPTMRDVNKKFSVRYFLNLVLVD |
.IK.E.TG.GP....E..TIAKYEIMDGAPV.GESIPIRLFLAGY..TPTMRD.NKKFSVRY.LNLVL.D | |
Retrocopy | IIKRETTGTGPNVYHENDTIAKYEIMDGAPVRGESIPIRLFLAGYELTPTMRDINKKFSVRYYLNLVLID |
Parental | EEDRRYFKQQEIILWRKAP---EKLRKQRTNFHQRFESPESQASAEQP |
EE.RRYFKQQE..LWRK..........Q.....QRFE...S......P | |
Retrocopy | EEERRYFKQQEVVLWRKGDIVRKSMSHQAAIASQRFEGTTSLGEVRTP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 19 .23 RPM | 21 .41 RPM |
SRP007412_cerebellum | 11 .29 RPM | 16 .31 RPM |
SRP007412_heart | 3 .47 RPM | 8 .69 RPM |
SRP007412_kidney | 4 .86 RPM | 18 .02 RPM |
SRP007412_liver | 6 .25 RPM | 8 .51 RPM |
SRP007412_testis | 3 .37 RPM | 30 .67 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000013827 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000007324 | 5 retrocopies | |
Callithrix jacchus | ENSCJAG00000012907 | 1 retrocopy | |
Equus caballus | ENSECAG00000009507 | 1 retrocopy | |
Homo sapiens | ENSG00000122958 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000010433 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000014940 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000004519 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000011548 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000002386 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000002567 | 3 retrocopies |
retro_ptro_1815, retro_ptro_2245, retro_ptro_4 ,
|
Tupaia belangeri | ENSTBEG00000015348 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000000630 | 1 retrocopy |