RetrogeneDB ID: | retro_ptro_2245 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 5:35671661..35672642(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSPTRG00000039087 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | VPS26A | ||
Ensembl ID: | ENSPTRG00000002567 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 100. % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSFLGGFFGPICEIDIVLNDGETRKMAEMKTEDGKVEKHYLFYDGESVSGKVNLAFKQPGKRLEHQGIRI |
MSFLGGFFGPICEIDIVLNDGETRKMAEMKTEDGKVEKHYLFYDGESVSGKVNLAFKQPGKRLEHQGIRI | |
Retrocopy | MSFLGGFFGPICEIDIVLNDGETRKMAEMKTEDGKVEKHYLFYDGESVSGKVNLAFKQPGKRLEHQGIRI |
Parental | EFVGQIELFNDKSNTHEFVNLVKELALPGELTQSRSYDFEFMQVEKPYESYIGANVRLRYFLKVTIVRRL |
EFVGQIELFNDKSNTHEFVNLVKELALPGELTQSRSYDFEFMQVEKPYESYIGANVRLRYFLKVTIVRRL | |
Retrocopy | EFVGQIELFNDKSNTHEFVNLVKELALPGELTQSRSYDFEFMQVEKPYESYIGANVRLRYFLKVTIVRRL |
Parental | TDLVKEYDLIVHQLATYPDVNNSIKMEVGIEDCLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIQHMELQ |
TDLVKEYDLIVHQLATYPDVNNSIKMEVGIEDCLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIQHMELQ | |
Retrocopy | TDLVKEYDLIVHQLATYPDVNNSIKMEVGIEDCLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIQHMELQ |
Parental | LIKKEITGIGPSTTTETETIAKYEIMDGAPVKGESIPIRLFLAGYDPTPTMRDVNKKFSVRYFLNLVLVD |
LIKKEITGIGPSTTTETETIAKYEIMDGAPVKGESIPIRLFLAGYDPTPTMRDVNKKFSVRYFLNLVLVD | |
Retrocopy | LIKKEITGIGPSTTTETETIAKYEIMDGAPVKGESIPIRLFLAGYDPTPTMRDVNKKFSVRYFLNLVLVD |
Parental | EEDRRYFKQQEIILWRKAPEKLRKQRTNFHQRFESPESQASAEQPEM |
EEDRRYFKQQEIILWRKAPEKLRKQRTNFHQRFESPESQASAEQPEM | |
Retrocopy | EEDRRYFKQQEIILWRKAPEKLRKQRTNFHQRFESPESQASAEQPEM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .61 RPM | 21 .41 RPM |
SRP007412_cerebellum | 0 .18 RPM | 16 .31 RPM |
SRP007412_heart | 0 .09 RPM | 8 .69 RPM |
SRP007412_kidney | 0 .08 RPM | 18 .02 RPM |
SRP007412_liver | 0 .07 RPM | 8 .51 RPM |
SRP007412_testis | 0 .32 RPM | 30 .67 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000013827 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000007324 | 5 retrocopies | |
Callithrix jacchus | ENSCJAG00000012907 | 1 retrocopy | |
Equus caballus | ENSECAG00000009507 | 1 retrocopy | |
Homo sapiens | ENSG00000122958 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000010433 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000014940 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000004519 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000011548 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000002386 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000002567 | 3 retrocopies |
retro_ptro_1815, retro_ptro_2245 , retro_ptro_4,
|
Tupaia belangeri | ENSTBEG00000015348 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000000630 | 1 retrocopy |