Parental gene:

RBM22, ENSCAFG00000018082

Aliases:None
Description:RNA binding motif protein 22 [Source:HGNC Symbol;Acc:25503]
Organism:Dog (Canis familiaris)
Coordinates:4:58460908..58469423(+)


>ENSCAFG00000018082
ATGGCGACCTCTCTGGGTTCCAACACCTACAACAGGCAGAACTGGGAGGATGCGGACTTCCCCATTCTGTGCCAGACGTG
TCTAGGAGAAAACCCATATATCCGAATGACCAAAGAAAAGTATGGGAAAGAATGTAAAATCTGTGCCAGGCCATTCACAG
TGTTTCGCTGGTGCCCCGGGGTCCGCATGCGTTTCAAGAAAACTGAAGTGTGCCAAACCTGTAGTAAATTGAAGAATGTC
TGTCAGACCTGCCTTTTGGACCTTGAGTACGGACTAGGCCTGCCCATCCAGGTTCGTGATGCAGGATTGTCTTTTAAGGA
TGACATGCCAAAGTCAGATGTCAACAAAGAGTACTACACACAGAATATGGAGAGAGAAATTTCTAACTCTGATGGAACGC
GACCAGTTGGCATGTTGGGGAAAGCTACATCCACCAGTGACATGCTGCTCAAGCTGGCCCGGACCACACCCTACTACAAG
AGGAATCGACCCCACATTTGCTCCTTCTGGGTAAAAGGAGAATGTAAGAGAGGAGAGGAATGTCCATACAGACATGAAAA
ACCAACAGATCCAGATGACCCCCTTGCTGATCAGAACATTAAAGACCGATATTATGGTATCAATGACCCTGTGGCAGATA
AGCTTCTAAAGCGAGCTTCCACAATGCCTCGTCTGGACCCGCCAGAGGACAAGACTATCACCACACTATATGTTGGTGGT
CTGGGCGATACTATTACTGAGACCGATCTAAGAAATCACTTCTACCAGTTTGGAGAAATCCGGACGATCACTGTTGTGCA
AAGACAGCAGTGTGCGTTCATCCAGTTTGCCACGAGGCAGGCTGCAGAGGTGGCTGCGGAGAAGTCCTTTAATAAGTTGA
TTGTCAATGGCCGTAGACTCAACGTGAAATGGGGAAGGTCCCAAGCAGCCAGAGGAAAAGAAAAAGAGAAGGATGGGACC
ACAGACTCTGGGATCAAGCTAGAGCCCGTTCCGGGACTGCCAGGAGCTCTTCCTCCTCCTCCTGCAGCAGAAGAAGAAGC
CTCTGCCAACTACTTCAACCTGCCCCCGAGTGGTCCTCCAGCTGTGGTGAACATTGCACTGCCACCTCCCCCTGGTATTG
CCCCACCCCCACCCCCAGGTTTTGGGCCACACATGTTCCACCCAATGGGACCACCCCCTCCTTTCATGAGGGCTCCAGGA
CCAATCCACTATCCTTCTCAGGACCCTCAGAGGATGGGAGCTCATGCTGGGAAACACAGCAGTCCCTAG

Library Parental gene expression (RPM)
SRP012049_cerebellum 17 .81 RPM
SRP017611_brain 11 .27 RPM
SRP017611_kidney 12 .68 RPM
SRP017611_liver 6 .89 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000020963 ortholog_one2one 6 retrogenes
retro_cjac_1338, retro_cjac_2471, retro_cjac_3342, retro_cjac_3390, retro_cjac_3934, retro_cjac_990,
Cavia porcellus ENSCPOG00000001946 ortholog_one2one 2 retrogenes
retro_cpor_280, retro_cpor_283,
Dasypus novemcinctus ENSDNOG00000011166 ortholog_one2one 1 retrogene
retro_dnov_2298,
Homo sapiens ENSG00000086589 ortholog_one2one 2 retrogenes
retro_hsap_3465, retro_hsap_4273,
Gorilla gorilla ENSGGOG00000012947 ortholog_one2one 2 retrogenes
retro_ggor_2337, retro_ggor_2859,
Myotis lucifugus ENSMLUG00000009040 possible_ortholog 2 retrogenes
retro_mluc_1453, retro_mluc_153,
Macaca mulatta ENSMMUG00000020683 ortholog_one2one 4 retrogenes
retro_mmul_1199, retro_mmul_1348, retro_mmul_1553, retro_mmul_1762,
Monodelphis domestica ENSMODG00000009574 possible_ortholog 1 retrogene
retro_mdom_186,
Pongo abelii ENSPPYG00000015955 ortholog_one2one 4 retrogenes
retro_pabe_1412, retro_pabe_1594, retro_pabe_2861, retro_pabe_3486,
Pan troglodytes ENSPTRG00000017423 ortholog_one2one 2 retrogenes
retro_ptro_2348, retro_ptro_2898,
Tarsius syrichta ENSTSYG00000003939 ortholog_one2one 3 retrogenes
retro_tsyr_1090, retro_tsyr_1187, retro_tsyr_1231,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_1480 97.63 100.00
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Download FASTA sequences of all ENSCAFG00000018082 retrocopies